species:   Fugra
pid:       PID0958
parent:    FgmilR-7dps-105
paralog:   
locus:     NC_026477.1:7038391-7038443
matures:   ['UGAGAGGUCGAUCGAAUGGAAGU', 'CCUUGGCGUCCUUCUUUAA']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026477.1:7038391-7038443

132 out of bounds
10 alignments
9 proper strand
7 stranded perfect matches

   ********************* *************************   
UCGACCCUUGGCGUCCUUCUUUAAGAUUGAGAGGUCGAUCGAAUGGAAGUUGA
(((((((((((((.(((.(((.......)))))).)).))))..))..)))))
---------------------------UGAGAGGUCGAUCGAAUGGAAGU--- l=23 a=5 c
-----CCUUGGCGUCCUUCUUUAA----------------------------- l=19 a=0 c*
---------------------------UGAGAGGUCGAUCGAAUGGAAGU--- l=23 a=5 ma
-----CCUUGGCGUCCUUCUUUAA----------------------------- l=19 a=0 ma*

---------------------------UGAGAGGUCGAUCGAAUGGAAGU--- l=23 a=5 (c,ma)
---------------------------UGAGAGGUCGAUCaAAUGGAAGU--- l=23 a=1 
---------------------------UGAGAGGUCGAUCGAAUGGAAGUU-- l=24 a=1 
--------------------------UUGAGAGGUCGAUCGAAUGGAAGcU-- l=25 a=1 
--------------------------UUGAGAGGUCGAUCGAAUGGAAGUU-- l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-101111101010
fn-111
